HL_4V64_126

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V64|1|CA|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_126 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2525

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V64|1|CA|C|1028
4V64|1|CA|U|1029
4V64|1|CA|U|1030
4V64|1|CA|C|1031
4V64|1|CA|G|1032
4V64|1|CA|G|1033

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA