HL_4V67_048

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4V67|1|BA|U|270|||M, 4V67|1|BA|U|270|||P

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_048 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.333

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V67|1|BA|G|270|||K
4V67|1|BA|C|270|||L
4V67|1|BA|U|270|||M
4V67|1|BA|U|270|||N
4V67|1|BA|G|270|||O
4V67|1|BA|U|270|||P
4V67|1|BA|C|270|||Q

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9