HL_4V67_108

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

4V67|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_108 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1019

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V67|1|BA|G|2819
4V67|1|BA|A|2820
4V67|1|BA|A|2821
4V67|1|BA|G|2822
4V67|1|BA|A|2823
4V67|1|BA|C|2824
4V67|1|BA|U|2825
4V67|1|BA|A|2826
4V67|1|BA|C|2827

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17