HL_4V67_116

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4V67|1|CA|U|189, 4V67|1|CA|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_116 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1693

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V67|1|CA|C|186|||G
4V67|1|CA|C|187
4V67|1|CA|U|188
4V67|1|CA|U|189
4V67|1|CA|G|190
4V67|1|CA|G|191|||A

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CQ

30S ribosomal protein S17