HL_4V67_162

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V67|1|DA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_162 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0789

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V67|1|DA|G|327
4V67|1|DA|U|328
4V67|1|DA|G|329
4V67|1|DA|A|330
4V67|1|DA|A|331
4V67|1|DA|A|332
4V67|1|DA|G|333
4V67|1|DA|C|334
4V67|1|DA|C|335

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24