HL_4V67_163

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V67|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_163 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0898

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V67|1|DA|G|382
4V67|1|DA|U|383
4V67|1|DA|U|384
4V67|1|DA|C|385
4V67|1|DA|G|386
4V67|1|DA|U|387
4V67|1|DA|G|388
4V67|1|DA|G|389
4V67|1|DA|A|390
4V67|1|DA|G|391
4V67|1|DA|C|392

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15