HL_4V67_200

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V67|1|DA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_200 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0863

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4V67|1|DA|G|1949
4V67|1|DA|G|1950
4V67|1|DA|U|1951
4V67|1|DA|A|1952
4V67|1|DA|A|1953
4V67|1|DA|G|1954
4V67|1|DA|U|1955
4V67|1|DA|U|1956
4V67|1|DA|C|1957

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CX

Bacterial peptide chain release factor 2 (RF-2)

Chain DO

50S ribosomal protein L14