HL_4V67_229

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCCCAUUCCGAACA

Length

15 nucleotides

Bulged bases

4V67|1|DB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_229 not in the Motif Atlas

Homologous match to HL_9DFE_067

Geometric discrepancy: 0.1434

The information below is about HL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V67|1|DB|U|34
4V67|1|DB|U|35
4V67|1|DB|C|36
4V67|1|DB|C|37
4V67|1|DB|C|38
4V67|1|DB|A|39
4V67|1|DB|U|40
4V67|1|DB|U|41
4V67|1|DB|C|42
4V67|1|DB|C|43
4V67|1|DB|G|44
4V67|1|DB|A|45
4V67|1|DB|A|46
4V67|1|DB|C|47
4V67|1|DB|A|48

Current chains

Chain DB

5S RRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18