HL_4V6A_106

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGGUUUUACUCCG

Length

15 nucleotides

Bulged bases

4V6A|1|CA|C|89, 4V6A|1|CA|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6A_106 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2073

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6A|1|CA|C|76
4V6A|1|CA|G|77
4V6A|1|CA|G|78
4V6A|1|CA|G|79
4V6A|1|CA|G|80
4V6A|1|CA|U|81
4V6A|1|CA|U|82
4V6A|1|CA|U|83
4V6A|1|CA|U|84
4V6A|1|CA|A|88
4V6A|1|CA|C|89
4V6A|1|CA|U|90
4V6A|1|CA|C|91
4V6A|1|CA|C|92
4V6A|1|CA|G|93

Current chains

Chain CA

16S ribosomal RNA

Nearby chains