HL_4V6A_193

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V6A|1|DA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6A_193 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2816

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V6A|1|DA|G|2302
4V6A|1|DA|G|2303
4V6A|1|DA|G|2304
4V6A|1|DA|A|2305
4V6A|1|DA|C|2306
4V6A|1|DA|G|2307
4V6A|1|DA|G|2308
4V6A|1|DA|A|2309
4V6A|1|DA|A|2310
4V6A|1|DA|A|2311
4V6A|1|DA|U|2312
4V6A|1|DA|C|2313
4V6A|1|DA|C|2314

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5