HL_4V6C_146

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V6C|1|DA|G|329, 4V6C|1|DA|A|330, 4V6C|1|DA|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6C_146 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.2122

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V6C|1|DA|G|327
4V6C|1|DA|U|328
4V6C|1|DA|G|329
4V6C|1|DA|A|330
4V6C|1|DA|C|331
4V6C|1|DA|A|332
4V6C|1|DA|G|333
4V6C|1|DA|C|334
4V6C|1|DA|C|335

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DU

50S ribosomal protein L24