HL_4V6D_024

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UUGUGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_024 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3388

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6D|1|AA|U|1075
4V6D|1|AA|U|1076
4V6D|1|AA|G|1077
4V6D|1|AA|U|1078
4V6D|1|AA|G|1079
4V6D|1|AA|A|1080
4V6D|1|AA|A|1081
4V6D|1|AA|A|1082

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5