HL_4V6D_066

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V6D|1|BA|U|1325, 4V6D|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_066 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1153

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6D|1|BA|G|1324
4V6D|1|BA|U|1325
4V6D|1|BA|U|1326
4V6D|1|BA|A|1327
4V6D|1|BA|A|1328
4V6D|1|BA|U|1329
4V6D|1|BA|C|1330

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22