HL_4V6D_072

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

4V6D|1|BA|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_072 not in the Motif Atlas

Homologous match to HL_7A0S_039

Geometric discrepancy: 0.1443

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V6D|1|BA|C|1565
4V6D|1|BA|A|1566
4V6D|1|BA|G|1567
4V6D|1|BA|G|1568

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2