HL_4V6D_082

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V6D|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_082 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.098

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4V6D|1|BA|G|1949
4V6D|1|BA|G|1950
4V6D|1|BA|U|1951
4V6D|1|BA|A|1952
4V6D|1|BA|A|1953
4V6D|1|BA|G|1954
4V6D|1|BA|U|1955
4V6D|1|BA|U|1956
4V6D|1|BA|C|1957

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S ribosomal protein L14