HL_4V6D_086

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V6D|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_086 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1482

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6D|1|BA|C|2248
4V6D|1|BA|U|2249
4V6D|1|BA|G|2250
4V6D|1|BA|G|2251
4V6D|1|BA|G|2252
4V6D|1|BA|G|2253
4V6D|1|BA|C|2254
4V6D|1|BA|G|2255
4V6D|1|BA|G|2256

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27