HL_4V6D_138

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V6D|1|DA|C|61, 4V6D|1|DA|U|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_138 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.5438

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6D|1|DA|U|59
4V6D|1|DA|G|60
4V6D|1|DA|C|61
4V6D|1|DA|U|62
4V6D|1|DA|A|63
4V6D|1|DA|A|64
4V6D|1|DA|U|65
4V6D|1|DA|C|66
4V6D|1|DA|U|67
4V6D|1|DA|G|68

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29