HL_4V6D_139
3D structure
- PDB id
- 4V6D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.81 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6D_139 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.2372
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6D|1|DA|U|87
4V6D|1|DA|G|88
4V6D|1|DA|A|89
4V6D|1|DA|U|90
4V6D|1|DA|A|91
4V6D|1|DA|U|92
4V6D|1|DA|G|93
4V6D|1|DA|A|94
4V6D|1|DA|A|95
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DT
- 50S ribosomal protein L23
- Chain DU
- 50S ribosomal protein L24
- Chain DY
- 50S ribosomal protein L29
Coloring options: