HL_4V6D_173
3D structure
- PDB id
- 4V6D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.81 Å
Loop
- Sequence
- GGCGACGGUUGUCC
- Length
- 14 nucleotides
- Bulged bases
- 4V6D|1|DA|A|1453, 4V6D|1|DA|G|1459, 4V6D|1|DA|U|1460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6D_173 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1038
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
4V6D|1|DA|G|1449
4V6D|1|DA|G|1450
4V6D|1|DA|C|1451
4V6D|1|DA|G|1452
4V6D|1|DA|A|1453
4V6D|1|DA|C|1454
4V6D|1|DA|G|1455
4V6D|1|DA|G|1456
4V6D|1|DA|U|1457
4V6D|1|DA|U|1458
4V6D|1|DA|G|1459
4V6D|1|DA|U|1460
4V6D|1|DA|C|1461
4V6D|1|DA|C|1462
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DN
- 50S ribosomal protein L17
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