HL_4V6D_192

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_192 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2804

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V6D|1|DA|G|2303
4V6D|1|DA|G|2304
4V6D|1|DA|U|2305
4V6D|1|DA|C|2306
4V6D|1|DA|G|2307
4V6D|1|DA|G|2308
4V6D|1|DA|A|2309
4V6D|1|DA|C|2310
4V6D|1|DA|A|2311
4V6D|1|DA|U|2312
4V6D|1|DA|C|2313

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5