HL_4V6E_020

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.121

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6E|1|AA|C|897
4V6E|1|AA|G|898
4V6E|1|AA|C|899
4V6E|1|AA|A|900
4V6E|1|AA|A|901
4V6E|1|AA|G|902

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA