3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6E_092 not in the Motif Atlas
Homologous match to HL_5J7L_193
Geometric discrepancy: 0.0888
The information below is about HL_5J7L_193
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V6E|1|BA|A|2471
4V6E|1|BA|G|2472
4V6E|1|BA|U|2473
4V6E|1|BA|U|2474
4V6E|1|BA|C|2475
4V6E|1|BA|A|2476
4V6E|1|BA|U|2477
4V6E|1|BA|A|2478
4V6E|1|BA|U|2479

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B4
50S ribosomal protein L36
Chain BG
50S ribosomal protein L6

Coloring options:


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