HL_4V6E_137

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V6E|1|DA|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_137 not in the Motif Atlas

Geometric match to HL_6N5P_003

Geometric discrepancy: 0.2656

The information below is about HL_6N5P_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V6E|1|DA|U|59
4V6E|1|DA|G|60
4V6E|1|DA|C|61
4V6E|1|DA|U|62
4V6E|1|DA|A|63
4V6E|1|DA|A|64
4V6E|1|DA|U|65
4V6E|1|DA|C|66
4V6E|1|DA|U|67
4V6E|1|DA|G|68

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29