HL_4V6E_163
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- GGAAACAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6E_163 not in the Motif Atlas
- Geometric match to HL_3AL0_001
- Geometric discrepancy: 0.3817
- The information below is about HL_3AL0_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V6E|1|DA|G|977
4V6E|1|DA|G|978
4V6E|1|DA|A|979
4V6E|1|DA|A|980
4V6E|1|DA|A|981
4V6E|1|DA|C|982
4V6E|1|DA|A|983
4V6E|1|DA|A|984
4V6E|1|DA|C|985
4V6E|1|DA|C|986
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L20
- Chain DR
- 50S ribosomal protein L21
- Chain DZ
- 50S ribosomal protein L30
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