HL_4V6E_215
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6E_215 not in the Motif Atlas
- Geometric match to HL_6GSK_203
- Geometric discrepancy: 0.1252
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6E|1|CX|A|31
4V6E|1|CX|U|32
4V6E|1|CX|U|33
4V6E|1|CX|G|34
4V6E|1|CX|A|35
4V6E|1|CX|A|36
4V6E|1|CX|A|37
4V6E|1|CX|A|38
4V6E|1|CX|U|39
Current chains
- Chain CX
- P-site tRNA ASL fragment
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S ribosomal protein S12
- Chain CW
- messenger RNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: