3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUCCACAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6F_062 not in the Motif Atlas
Homologous match to HL_7RQB_060
Geometric discrepancy: 0.332
The information below is about HL_7RQB_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06192.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
14

Unit IDs

4V6F|1|AA|C|2471
4V6F|1|AA|G|2472
4V6F|1|AA|U|2473
4V6F|1|AA|C|2474
4V6F|1|AA|C|2475
4V6F|1|AA|A|2476
4V6F|1|AA|C|2477
4V6F|1|AA|A|2478
4V6F|1|AA|G|2479

Current chains

Chain AA
23S RIBOSOMAL RNA

Nearby chains

Chain AP
50S RIBOSOMAL PROTEIN L16
Chain BB
Transfer RNA; tRNA

Coloring options:


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