HL_4V6F_147

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V6F|1|CB|U|16, 4V6F|1|CB|C|17, 4V6F|1|CB|G|18, 4V6F|1|CB|G|19, 4V6F|1|CB|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_147 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1999

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6F|1|CB|C|13
4V6F|1|CB|A|14
4V6F|1|CB|G|15
4V6F|1|CB|U|16
4V6F|1|CB|C|17
4V6F|1|CB|G|18
4V6F|1|CB|G|19
4V6F|1|CB|U|20
4V6F|1|CB|A|21
4V6F|1|CB|G|22

Current chains

Chain CB

TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA