HL_4V6F_152
3D structure
- PDB id
- 4V6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation complex of the 70S ribosome with three tRNAs and mRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6F_152 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.1095
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
4V6F|1|CC|G|53
4V6F|1|CC|U|54
4V6F|1|CC|U|55
4V6F|1|CC|C|56
4V6F|1|CC|G|57
4V6F|1|CC|A|58
4V6F|1|CC|U|59
4V6F|1|CC|U|60
4V6F|1|CC|C|61
Current chains
- Chain CC
- TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DP
- 50S RIBOSOMAL PROTEIN L16
Coloring options: