HL_4V6F_185

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V6F|1|DA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_185 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4416

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6F|1|DA|C|1064
4V6F|1|DA|U|1065
4V6F|1|DA|U|1066
4V6F|1|DA|A|1067
4V6F|1|DA|G|1068
4V6F|1|DA|A|1069
4V6F|1|DA|A|1070
4V6F|1|DA|G|1071
4V6F|1|DA|C|1072
4V6F|1|DA|A|1073
4V6F|1|DA|G|1074

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DL

50S ribosomal protein L11

Chain DV

50S RIBOSOMAL PROTEIN L25