HL_4V6F_213

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_213 not in the Motif Atlas

Geometric match to HL_5TBW_056

Geometric discrepancy: 0.2739

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6F|1|DA|G|2304
4V6F|1|DA|A|2305
4V6F|1|DA|C|2306
4V6F|1|DA|G|2307
4V6F|1|DA|G|2308
4V6F|1|DA|A|2309
4V6F|1|DA|A|2310
4V6F|1|DA|A|2311
4V6F|1|DA|U|2312

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DG

50S RIBOSOMAL PROTEIN L5