HL_4V6G_012

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4V6G|1|AA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.3262

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V6G|1|AA|C|458
4V6G|1|AA|G|464
4V6G|1|AA|A|465
4V6G|1|AA|C|466
4V6G|1|AA|G|467
4V6G|1|AA|A|468
4V6G|1|AA|G|474

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AS

30S RIBOSOMAL PROTEIN S16