HL_4V6G_114

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

4V6G|1|CA|U|189, 4V6G|1|CA|G|190, 4V6G|1|CA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_114 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.2212

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V6G|1|CA|C|186|||F
4V6G|1|CA|C|187
4V6G|1|CA|U|188
4V6G|1|CA|U|189
4V6G|1|CA|G|190
4V6G|1|CA|G|191
4V6G|1|CA|G|191|||A

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S17

Chain CW

30S RIBOSOMAL PROTEIN S20