HL_4V6G_176

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V6G|1|DA|U|827, 4V6G|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_176 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0956

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V6G|1|DA|U|826
4V6G|1|DA|U|827
4V6G|1|DA|U|828
4V6G|1|DA|A|829
4V6G|1|DA|G|830
4V6G|1|DA|G|831

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DO

50S ribosomal protein L15