HL_4V6G_213

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4V6G|1|DA|A|2476, 4V6G|1|DA|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_213 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.2106

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V6G|1|DA|C|2471
4V6G|1|DA|G|2472
4V6G|1|DA|U|2473
4V6G|1|DA|C|2474
4V6G|1|DA|C|2475
4V6G|1|DA|A|2476
4V6G|1|DA|C|2477
4V6G|1|DA|A|2478
4V6G|1|DA|G|2479

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain DP

50S ribosomal protein L16