HL_4V7K_006

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V7K|1|AA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0692

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V7K|1|AA|G|194
4V7K|1|AA|A|195
4V7K|1|AA|A|196
4V7K|1|AA|A|197
4V7K|1|AA|C|198
4V7K|1|AA|A|199
4V7K|1|AA|U|200
4V7K|1|AA|C|201

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AP

50S ribosomal protein L15