HL_4V7K_008

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_008 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0624

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

4V7K|1|AA|C|246
4V7K|1|AA|G|247
4V7K|1|AA|G|248
4V7K|1|AA|C|249
4V7K|1|AA|G|250
4V7K|1|AA|A|251
4V7K|1|AA|G|252

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A1

50S ribosomal protein L28

Chain A8

50S ribosomal protein L35

Chain AP

50S ribosomal protein L15

Chain Aw

Transfer RNA; tRNA