HL_4V7K_069

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V7K|1|AA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_069 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0575

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V7K|1|AA|G|2819
4V7K|1|AA|A|2820
4V7K|1|AA|A|2821
4V7K|1|AA|G|2822
4V7K|1|AA|A|2823
4V7K|1|AA|C|2824
4V7K|1|AA|C|2825
4V7K|1|AA|A|2826
4V7K|1|AA|C|2827

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L17