HL_4V7K_109
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7K_109 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.1369
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V7K|1|Aw|G|53
4V7K|1|Aw|U|54
4V7K|1|Aw|U|55
4V7K|1|Aw|C|56
4V7K|1|Aw|A|57
4V7K|1|Aw|A|58
4V7K|1|Aw|A|59
4V7K|1|Aw|U|60
4V7K|1|Aw|C|61
Current chains
- Chain Aw
- RNA (77-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AC
- 50S ribosomal protein L1
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