3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGACCACC
Length
8 nucleotides
Bulged bases
4V7K|1|BA|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7K_123 not in the Motif Atlas
Homologous match to HL_7RQB_014
Geometric discrepancy: 0.1177
The information below is about HL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_96598.1
Basepair signature
cWW
Number of instances in this motif group
15

Unit IDs

4V7K|1|BA|G|410
4V7K|1|BA|G|411
4V7K|1|BA|A|412
4V7K|1|BA|C|413
4V7K|1|BA|C|414
4V7K|1|BA|A|415
4V7K|1|BA|C|416
4V7K|1|BA|C|417

Current chains

Chain BA
RNA (2848-MER)

Nearby chains

Chain B1
50S ribosomal protein L28
Chain BP
50S ribosomal protein L15

Coloring options:


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