HL_4V7K_234

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V7K|1|BA|G|2307, 4V7K|1|BA|A|2310, 4V7K|1|BA|U|2312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_234 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2965

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7K|1|BA|G|2302
4V7K|1|BA|G|2303
4V7K|1|BA|G|2304
4V7K|1|BA|A|2305
4V7K|1|BA|C|2306
4V7K|1|BA|G|2307
4V7K|1|BA|G|2308
4V7K|1|BA|A|2309
4V7K|1|BA|A|2310
4V7K|1|BA|A|2311
4V7K|1|BA|U|2312
4V7K|1|BA|C|2313
4V7K|1|BA|C|2314

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5

Chain Bv

Transfer RNA; tRNA