HL_4V7K_237

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_237 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2979

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7K|1|Ba|G|377
4V7K|1|Ba|G|378
4V7K|1|Ba|C|379
4V7K|1|Ba|G|380
4V7K|1|Ba|C|381
4V7K|1|Ba|A|382
4V7K|1|Ba|A|383
4V7K|1|Ba|G|384
4V7K|1|Ba|C|385
4V7K|1|Ba|C|386

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16