HL_4V7L_064

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V7L|1|BA|A|781, 4V7L|1|BA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_064 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2783

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7L|1|BA|U|779
4V7L|1|BA|G|780
4V7L|1|BA|A|781
4V7L|1|BA|A|782
4V7L|1|BA|A|783
4V7L|1|BA|A|784
4V7L|1|BA|G|785

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2