HL_4V7L_069

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGCGAAGACAGCCAGUCGAGUGG

Length

24 nucleotides

Bulged bases

4V7L|1|BA|A|1046, 4V7L|1|BA|C|1053

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_069 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1616

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7L|1|BA|C|1040
4V7L|1|BA|C|1041
4V7L|1|BA|G|1042
4V7L|1|BA|C|1043
4V7L|1|BA|G|1044
4V7L|1|BA|A|1045
4V7L|1|BA|A|1046
4V7L|1|BA|G|1047
4V7L|1|BA|A|1048
4V7L|1|BA|C|1049
4V7L|1|BA|A|1050
4V7L|1|BA|G|1051
4V7L|1|BA|C|1052
4V7L|1|BA|C|1053
4V7L|1|BA|A|1054
4V7L|1|BA|G|1055
4V7L|1|BA|U|1108
4V7L|1|BA|C|1109
4V7L|1|BA|G|1110
4V7L|1|BA|A|1111
4V7L|1|BA|G|1112
4V7L|1|BA|U|1113
4V7L|1|BA|G|1114
4V7L|1|BA|G|1115

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L25