HL_4V7L_108

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_108 not in the Motif Atlas

Homologous match to HL_4WF9_065

Geometric discrepancy: 0.1884

The information below is about HL_4WF9_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7L|1|BA|C|2856
4V7L|1|BA|G|2857
4V7L|1|BA|C|2858
4V7L|1|BA|G|2859
4V7L|1|BA|A|2860
4V7L|1|BA|G|2861

Current chains

Chain BA

23S ribosomal RNA

Nearby chains