HL_4V7L_143

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUCUGAUUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_143 not in the Motif Atlas

Homologous match to HL_5E6M_002

Geometric discrepancy: 0.4611

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37734.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V7L|1|CW|G|29
4V7L|1|CW|A|30
4V7L|1|CW|U|31
4V7L|1|CW|U|32
4V7L|1|CW|C|33
4V7L|1|CW|U|34
4V7L|1|CW|G|35
4V7L|1|CW|A|36
4V7L|1|CW|U|37
4V7L|1|CW|U|38
4V7L|1|CW|C|39

Current chains

Chain CW

tRNA-Gln

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CL

30S ribosomal protein S12

Chain CM

30S ribosomal protein S13

Chain CV

RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')

Chain CZ

Viomycin

Chain DA

Large subunit ribosomal RNA; LSU rRNA