HL_4V7L_143
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAUUCUGAUUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7L_143 not in the Motif Atlas
- Homologous match to HL_5E6M_002
- Geometric discrepancy: 0.4611
- The information below is about HL_5E6M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38808.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7L|1|CW|G|29
4V7L|1|CW|A|30
4V7L|1|CW|U|31
4V7L|1|CW|U|32
4V7L|1|CW|C|33
4V7L|1|CW|U|34
4V7L|1|CW|G|35
4V7L|1|CW|A|36
4V7L|1|CW|U|37
4V7L|1|CW|U|38
4V7L|1|CW|C|39
Current chains
- Chain CW
- tRNA-Gln
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S ribosomal protein S12
- Chain CM
- 30S ribosomal protein S13
- Chain CV
- RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
- Chain CZ
- Viomycin
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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