HL_4V7L_220

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

4V7L|1|DB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_220 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.18

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V7L|1|DB|C|38
4V7L|1|DB|A|39
4V7L|1|DB|U|40
4V7L|1|DB|U|41
4V7L|1|DB|C|42
4V7L|1|DB|C|43
4V7L|1|DB|G|44

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18