HL_4V7L_225

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V7L|1|AA|U|839, 4V7L|1|AA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_225 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.268

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V7L|1|AA|G|837
4V7L|1|AA|G|838
4V7L|1|AA|U|839
4V7L|1|AA|C|840
4V7L|1|AA|U|841
4V7L|1|AA|C|848
4V7L|1|AA|C|849

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18