HL_4V7L_227

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGGAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_227 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2989

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7L|1|AA|C|1514
4V7L|1|AA|C|1515
4V7L|1|AA|G|1516
4V7L|1|AA|G|1517
4V7L|1|AA|A|1518
4V7L|1|AA|A|1519
4V7L|1|AA|G|1520
4V7L|1|AA|G|1521

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA