HL_4V7L_228

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

4V7L|1|AX|C|16, 4V7L|1|AX|C|17, 4V7L|1|AX|U|17|||B, 4V7L|1|AX|G|18, 4V7L|1|AX|G|19, 4V7L|1|AX|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_228 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.397

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

4V7L|1|AX|G|12
4V7L|1|AX|C|13
4V7L|1|AX|A|14
4V7L|1|AX|G|15
4V7L|1|AX|C|16
4V7L|1|AX|C|17
4V7L|1|AX|U|17|||B
4V7L|1|AX|G|18
4V7L|1|AX|G|19
4V7L|1|AX|U|20
4V7L|1|AX|A|21
4V7L|1|AX|G|22
4V7L|1|AX|C|23

Current chains

Chain AX

tRNA-Met

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5