HL_4V7L_233

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V7L|1|BA|G|2307, 4V7L|1|BA|A|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_233 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2956

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7L|1|BA|G|2302
4V7L|1|BA|G|2303
4V7L|1|BA|G|2304
4V7L|1|BA|A|2305
4V7L|1|BA|C|2306
4V7L|1|BA|G|2307
4V7L|1|BA|G|2308
4V7L|1|BA|A|2309
4V7L|1|BA|A|2310
4V7L|1|BA|A|2311
4V7L|1|BA|U|2312
4V7L|1|BA|C|2313
4V7L|1|BA|C|2314

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5